Software
R packages I develop or help maintain. Most are on CRAN and can be installed with install.packages(). More code from the lab is on the Maitner Lab GitHub.
Biodiversity data access
- BIEN: tools for accessing the Botanical Information and Ecology Network database: plant occurrences, traits, plots, and range maps. CRAN · GitHub · paper
- OpenRange: access open species range maps. CRAN · GitHub
Biodiversity data cleaning
R interfaces to the BIEN data-cleaning services:
- TNRS: Taxonomic Name Resolution Service, which corrects and standardizes plant names. CRAN · GitHub
- GNRS: Geographic Name Resolution Service, which standardizes country, state, and county names. CRAN · GitHub · paper
- NSR: Native Status Resolver, which flags whether a species is native or introduced in a region. CRAN · GitHub
- GVS: Geocoordinate Validation Service, which checks occurrence coordinates for common errors. CRAN · GitHub
Analysis
- S4DM: species distribution modeling with small sample sizes. CRAN · GitHub · paper
- traitstrap: bootstrapping trait distributions from community data. CRAN · GitHub · paper
Open Science
- citeR: finds the R packages used in your code so you can cite them. GitHub